This document is not ready. {{{ [15:44:06][mikaelb(mykopat-grid-admin)@my-mgrid: /opt/sources]$ rm -rf ~/.cpan && perl -MCPAN -e shell CPAN.pm requires configuration, but most of it can be done automatically. If you answer 'no' below, you will enter an interactive dialog for each configuration option instead. Would you like to configure as much as possible automatically? [yes] Autoconfigured everything but 'urllist'. Now you need to choose your CPAN mirror sites. You can let me pick mirrors for you, you can select them from a list or you can enter them by hand. Would you like me to automatically choose some CPAN mirror sites for you? (This means connecting to the Internet) [yes] Trying to fetch a mirror list from the Internet Fetching with LWP: http://www.perl.org/CPAN/MIRRORED.BY Looking for CPAN mirrors near you (please be patient) ......................... done! New urllist http://www.cpan.dk/ http://mirrors.dotsrc.org/cpan/ http://artfiles.org/cpan.org/ Autoconfiguration complete. commit: wrote '/net/gridnas4/volume3/home1/mikaelb/.cpan/CPAN/MyConfig.pm' You can re-run configuration any time with 'o conf init' in the CPAN shell cpan shell -- CPAN exploration and modules installation (v1.9800) Enter 'h' for help. cpan[1]> i /bioperl/ Fetching with LWP: http://www.cpan.dk/authors/01mailrc.txt.gz Reading '/net/gridnas4/volume3/home1/mikaelb/.cpan/sources/authors/01mailrc.txt.gz' ............................................................................DONE Fetching with LWP: http://www.cpan.dk/modules/02packages.details.txt.gz Reading '/net/gridnas4/volume3/home1/mikaelb/.cpan/sources/modules/02packages.details.txt.gz' Database was generated on Mon, 10 Sep 2012 13:35:04 GMT ............................................................................DONE Fetching with LWP: http://www.cpan.dk/modules/03modlist.data.gz Reading '/net/gridnas4/volume3/home1/mikaelb/.cpan/sources/modules/03modlist.data.gz' ............................................................................DONE Writing /net/gridnas4/volume3/home1/mikaelb/.cpan/Metadata Bundle Bundle::BioPerl (CRAFFI/Bundle-BioPerl-2.1.8.tar.gz) Distribution BOZO/Fry-Lib-BioPerl-0.15.tar.gz Distribution CJFIELDS/BioPerl-1.6.1.tar.gz Distribution CJFIELDS/BioPerl-1.6.901.tar.gz Distribution CJFIELDS/BioPerl-DB-1.006900.tar.gz Distribution CJFIELDS/BioPerl-Network-1.006902.tar.gz Distribution CJFIELDS/BioPerl-Run-1.006900.tar.gz Distribution CJFIELDS/Dist-Zilla-PluginBundle-BioPerl-0.02.tar.gz Distribution CRAFFI/Bundle-BioPerl-2.1.8.tar.gz Distribution RBUELS/Dist-Zilla-PluginBundle-Bioperl-0.01.tar.gz Module < Bio::LiveSeq::IO::BioPerl (CJFIELDS/BioPerl-1.6.901.tar.gz) Module < Dist::Zilla::PluginBundle::BioPerl (CJFIELDS/Dist-Zilla-PluginBundle-BioPerl-0.02.tar.gz) Module < Dist::Zilla::PluginBundle::Bioperl (RBUELS/Dist-Zilla-PluginBundle-Bioperl-0.01.tar.gz) Module < Fry::Lib::BioPerl (BOZO/Fry-Lib-BioPerl-0.15.tar.gz) Author BIOPERLML ("Bioperl-l" ) 15 items found cpan[2]> o conf makepl_arg PREFIX=/opt/sw/bioperl/2.1.8 makepl_arg [PREFIX=/opt/sw/bioperl/2.1.8] Please use 'o conf commit' to make the config permanent! cpan[3]> conf mbuildpl_arg "--prefix /opt/sw/bioperl/2.1.8" Please use 'o conf commit' to make the config permanent! cpan[4]> install Bundle::BioPerl [... lots of output ] }}}