== BBTools ==

Load procedure: !`module load bbtools`

The software and instructions can be found on: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/

BBTools contain several tools that can be used for data manipulation and filtering, including adapter removal and quality trimming.

=== Mykopat Grid specifics ===
To run this package, just follow the instructions in the documentation. The option "-Xmx" can be used to set the maximum memory used by the commands.

In the folder /opt/sources/bbtools_38.90/resources/ you can find some files that come with the bbtools installation and might be mentioned in the BBTools guide.
For example, the file /opt/sources/bbtools_38.90/resources/adapters.fa is the file with the most used adapter sequences that is mentioned in the guide for the "bbduk" command.

=== Installed versions ===
38.90