== GraftM == Load procedure: `module load graftm` The software and instructions can be found on: https://pypi.org/project/graftm/ === Mykopat Grid specifics === Depends on the following modules (no need to load them): * orfm * hmmer * fxtract * pplacer * krona * mafft * diamond Call software using the `graftM` command === Installed versions === * 0.12.2 * 0.13.1 * 0.15.1 ==== NOTE ON 0.13.1/0.15.1 ===== These versions are Python3 ONLY. You DO NOT have to call modules to run graftm/0.13.1 or 0.15.1. These have been specified in the module file. All python dependencies EXCEPT numpy-py3 (and bird_tool_utils-py3 for 0.15.1) are in the python libraries path specified for graftM.