== Subread software package ==

Load procedure: !`module load subread`

The software instructions can be found on: ​https://bioconductor.org/packages/release/bioc/vignettes/Rsubread/inst/doc/SubreadUsersGuide.pdf
I find the command "featureCounts" to be particularly useful for quantifying reads from bam files.

=== Mykopat Grid specifics ===
Run according to instructions on the home page. Please match the -T option to the number of threads you request with SGE option -pe smp.

=== Installed versions ===
    2.0.2


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