Changes between Initial Version and Version 1 of Admin/StandardOperatingProcedures/PerlPackageInstall

Timestamp:

Sep 10, 2012, 2:51:36 PM (13 years ago)

Author:

Mikael Brandström Durling

Comment:

--

Admin/StandardOperatingProcedures/PerlPackageInstall

@@ +1 @@
+This document is not ready.
+{{{
+
+[15:44:06][mikaelb(mykopat-grid-admin)@my-mgrid: /opt/sources]$ rm -rf ~/.cpan && perl -MCPAN -e shell
+
+CPAN.pm requires configuration, but most of it can be done automatically.
+If you answer 'no' below, you will enter an interactive dialog for each
+configuration option instead.   
+
+Would you like to configure as much as possible automatically? [yes]
+
+Autoconfigured everything but 'urllist'.
+
+Now you need to choose your CPAN mirror sites.  You can let me
+pick mirrors for you, you can select them from a list or you
+can enter them by hand.
+
+Would you like me to automatically choose some CPAN mirror
+sites for you? (This means connecting to the Internet) [yes] 
+Trying to fetch a mirror list from the Internet
+Fetching with LWP:
+http://www.perl.org/CPAN/MIRRORED.BY
+
+Looking for CPAN mirrors near you (please be patient)
+......................... done!
+
+New urllist
+  http://www.cpan.dk/
+  http://mirrors.dotsrc.org/cpan/
+  http://artfiles.org/cpan.org/
+
+Autoconfiguration complete.
+
+commit: wrote '/net/gridnas4/volume3/home1/mikaelb/.cpan/CPAN/MyConfig.pm'
+
+You can re-run configuration any time with 'o conf init' in the CPAN shell
+
+cpan shell -- CPAN exploration and modules installation (v1.9800)
+Enter 'h' for help.
+
+                                                                                                                                                                                                                                                               
+cpan[1]> i /bioperl/                              
+Fetching with LWP:
+http://www.cpan.dk/authors/01mailrc.txt.gz
+Reading '/net/gridnas4/volume3/home1/mikaelb/.cpan/sources/authors/01mailrc.txt.gz'
+............................................................................DONE
+Fetching with LWP:
+http://www.cpan.dk/modules/02packages.details.txt.gz
+Reading '/net/gridnas4/volume3/home1/mikaelb/.cpan/sources/modules/02packages.details.txt.gz'
+  Database was generated on Mon, 10 Sep 2012 13:35:04 GMT
+............................................................................DONE
+Fetching with LWP:
+http://www.cpan.dk/modules/03modlist.data.gz
+Reading '/net/gridnas4/volume3/home1/mikaelb/.cpan/sources/modules/03modlist.data.gz'
+............................................................................DONE
+Writing /net/gridnas4/volume3/home1/mikaelb/.cpan/Metadata
+Bundle    Bundle::BioPerl        (CRAFFI/Bundle-BioPerl-2.1.8.tar.gz)
+Distribution    BOZO/Fry-Lib-BioPerl-0.15.tar.gz
+Distribution    CJFIELDS/BioPerl-1.6.1.tar.gz
+Distribution    CJFIELDS/BioPerl-1.6.901.tar.gz
+Distribution    CJFIELDS/BioPerl-DB-1.006900.tar.gz
+Distribution    CJFIELDS/BioPerl-Network-1.006902.tar.gz
+Distribution    CJFIELDS/BioPerl-Run-1.006900.tar.gz
+Distribution    CJFIELDS/Dist-Zilla-PluginBundle-BioPerl-0.02.tar.gz
+Distribution    CRAFFI/Bundle-BioPerl-2.1.8.tar.gz
+Distribution    RBUELS/Dist-Zilla-PluginBundle-Bioperl-0.01.tar.gz
+Module  < Bio::LiveSeq::IO::BioPerl (CJFIELDS/BioPerl-1.6.901.tar.gz)
+Module  < Dist::Zilla::PluginBundle::BioPerl (CJFIELDS/Dist-Zilla-PluginBundle-BioPerl-0.02.tar.gz)
+Module  < Dist::Zilla::PluginBundle::Bioperl (RBUELS/Dist-Zilla-PluginBundle-Bioperl-0.01.tar.gz)
+Module  < Fry::Lib::BioPerl      (BOZO/Fry-Lib-BioPerl-0.15.tar.gz)
+Author          BIOPERLML ("Bioperl-l" <bioperl-l@lists.open-bio.org>)
+15 items found
+
+                                                                                                                                                                                                                                                               cpan[2]> o conf makepl_arg PREFIX=/opt/sw/bioperl/2.1.8
+    makepl_arg         [PREFIX=/opt/sw/bioperl/2.1.8]
+Please use 'o conf commit' to make the config permanent!
+
+
+                                                                                                                                                                                                                                                               cpan[3]> conf mbuildpl_arg "--prefix /opt/sw/bioperl/2.1.8"
+Unknown shell command 'conf'. Type ? for help.
+
+                                                                                                                                                                                                                                                               cpan[4]> install Bundle::BioPerl
+
+
+}}}