Changes between Version 9 and Version 10 of Software/IQ-TREE
- Timestamp:
- Oct 6, 2022, 5:49:14 PM (2 years ago)
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Software/IQ-TREE
v9 v10 14 14 15 15 16 ===QUIRK NOTE FOR PARTITIONED ALIGNMENTS:=== 16 17 === QUIRK NOTE FOR PARTITIONED ALIGNMENTS: === 17 18 If you have a RAXML-type .txt file specifying where partitions begin and end want to build a tree, you have to let iqtree determine those partitions for you and use the resultant XXXbest_scheme.nex file as input for "real" tree building. It doesn't correctly recognize models in RAXML-type partition files for treebuilding. 18 19 19 20 ex. start with something like: 21 22 20 23 iqtree2 -s sequences.phy -p raxml_type_partitionsfile.txt -ntmax 10 -T AUTO -m TESTMERGEONLY 21 24 22 25 followed by: 26 27 23 28 iqtree2 -s sequences.phy -p raxml_type_partitionsfile.txt.best_scheme.nex ... 24 29