Changes between Version 9 and Version 10 of Software/IQ-TREE


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Timestamp:
Oct 6, 2022, 5:49:14 PM (20 months ago)
Author:
grpo0001
Comment:

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  • Software/IQ-TREE

    v9 v10  
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    16 ===QUIRK NOTE FOR PARTITIONED ALIGNMENTS:===
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     17=== QUIRK NOTE FOR PARTITIONED ALIGNMENTS: ===
    1718If you have a RAXML-type .txt file specifying where partitions begin and end want to build a tree, you have to let iqtree determine those partitions for you and use the resultant XXXbest_scheme.nex file as input for "real" tree building. It doesn't correctly recognize models in RAXML-type partition files for treebuilding.
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    1920ex. start with something like:
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    2023iqtree2 -s sequences.phy -p raxml_type_partitionsfile.txt  -ntmax 10 -T AUTO -m TESTMERGEONLY
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    2225followed by:
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    2328iqtree2 -s sequences.phy -p raxml_type_partitionsfile.txt.best_scheme.nex ...
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