Changes between Version 8 and Version 9 of Software/IQ-TREE


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Timestamp:
Oct 6, 2022, 5:48:17 PM (3 years ago)
Author:
grpo0001
Comment:

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  • Software/IQ-TREE

    v8 v9  
    1414
    1515
    16 QUIRK NOTE FOR PARTITIONED ALIGNMENTS: if you have a RAXML-type .txt file specifying where partitions begin and end want to build a tree, you have to let iqtree determine those partitions for you and use the resultant XXXbest_scheme.nex file as input for "real" tree building. It doesn't correctly recognize models in RAXML-type partition files for treebuilding.
     16===QUIRK NOTE FOR PARTITIONED ALIGNMENTS:===
     17If you have a RAXML-type .txt file specifying where partitions begin and end want to build a tree, you have to let iqtree determine those partitions for you and use the resultant XXXbest_scheme.nex file as input for "real" tree building. It doesn't correctly recognize models in RAXML-type partition files for treebuilding.
    1718
    1819ex. start with something like: