| 1 | == Jellyfish == |
| 2 | |
| 3 | Citing the authors' home page: Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers quickly by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. |
| 4 | |
| 5 | Load procedure: `module load jellyfish` |
| 6 | |
| 7 | The software and instructions can be found on: http://www.genome.umd.edu/jellyfish.html |
| 8 | |
| 9 | |
| 10 | === Mykopat Grid specifics === |
| 11 | None. |
| 12 | |
| 13 | === Installed versions === |
| 14 | - 2.3.0 |