Changes between Initial Version and Version 1 of Software/Jellyfish


Ignore:
Timestamp:
Mar 10, 2021, 3:25:40 PM (3 years ago)
Author:
Mikael Brandström Durling
Comment:

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  • Software/Jellyfish

    v1 v1  
     1== Jellyfish ==
     2
     3Citing the authors' home page: Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers quickly by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
     4
     5Load procedure: `module load jellyfish`
     6
     7The software and instructions can be found on: http://www.genome.umd.edu/jellyfish.html
     8
     9
     10=== Mykopat Grid specifics ===
     11None.
     12
     13=== Installed versions ===
     14 - 2.3.0