Changes between Initial Version and Version 1 of Software/Nesoni


Ignore:
Timestamp:
Mar 30, 2012, 3:23:51 PM (12 years ago)
Author:
Mikael Brandström Durling
Comment:

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  • Software/Nesoni

    v1 v1  
     1== Nesoni --  ==
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     3"Swiss army knife for NGS SNP calling / RNA-Seq DGE / read cleaning. A high-throughput sequencing data analysis toolset, focussing on analysis of short reads aligned to a reference sequence." acceding to the authors.
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     5The software and instructions can be found on: http://bioinformatics.net.au/software.nesoni.shtml or by simply typing ```nesoni``` at the prompt once logged in on my-mgrid.
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     7The program has a very good adopter clipping and quality trimming function called clip.
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     9=== Mykopat Grid specifics ===
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     12Sample usage for clipping an Illumina dataset:
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     14```qsub -l h_rt=4:0:0,h_vmem=1G -cwd -N nesoni -m ae <<< 'nesoni clip --quality 30 --length 35 --trim-start 3 --trim-end 5 --gzip yes s7_trimmed pairs: s_7_1_sequence.txt.gz s_7_2_sequence.txt.gz'```
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