Changes between Initial Version and Version 1 of Software/Nesoni

Timestamp:

Mar 30, 2012, 3:23:51 PM (13 years ago)

Author:

Mikael Brandström Durling

Comment:

--

Software/Nesoni

@@ +1 @@
+== Nesoni --  ==
+
+"Swiss army knife for NGS SNP calling / RNA-Seq DGE / read cleaning. A high-throughput sequencing data analysis toolset, focussing on analysis of short reads aligned to a reference sequence." acceding to the authors.
+
+The software and instructions can be found on: http://bioinformatics.net.au/software.nesoni.shtml or by simply typing ```nesoni``` at the prompt once logged in on my-mgrid.
+
+The program has a very good adopter clipping and quality trimming function called clip.
+
+=== Mykopat Grid specifics ===
+
+
+Sample usage for clipping an Illumina dataset:
+
+```qsub -l h_rt=4:0:0,h_vmem=1G -cwd -N nesoni -m ae <<< 'nesoni clip --quality 30 --length 35 --trim-start 3 --trim-end 5 --gzip yes s7_trimmed pairs: s_7_1_sequence.txt.gz s_7_2_sequence.txt.gz'```
+
+