Changes between Initial Version and Version 1 of Software/Oases


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Timestamp:
Jul 5, 2011, 9:44:53 AM (13 years ago)
Author:
Patrik Söderström
Comment:

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  • Software/Oases

    v1 v1  
     1    Oases is a de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic
     2
     3assembly. It is similar to Velvet, but optimised for transcriptome assembly. * Perl modules for BioPerl? - These are useful if you write your own perl scripts. * Python modules for BioPython? - The Python ditto to BioPerl?. * [Tablet] - Tablet is a lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments. You can - search and locate reads by name or subsequence across entire data sets, do entire-contig overviews, showing data layout or coverage information and display of reads in both packed and stacked formats. - users can install and run this in their local folders. It can be downloaded from here.