Changes between Version 2 and Version 3 of Software/Velvet
- Timestamp:
- Dec 3, 2020, 3:46:41 PM (4 years ago)
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Software/Velvet
v2 v3 1 short read assembler - Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa. Can be used to do whole genome assemblies of Illumina Genome Analyzer (Solexa) data. 1 == Velvet == 2 3 Load procedure: `module load velvet` 4 5 Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa. Can be used to do whole genome assemblies of Illumina Genome Analyzer (Solexa) data. 2 6 3 7 Velvet can use large amounts of memory. Especially if the dataset is not filtered. A good starting point for a 30M fungal genome could be somewhere in the order of 30GB of ram. 4 8 5 9 To obtain the best possible assemblies, you should do proper filtering of the datasets. Low quality reads and adapters must be removed. 10 11 === Mykopat Grid specifics === 12 None. 13 14 === Installed versions ===