Changes between Version 13 and Version 14 of Software


Ignore:
Timestamp:
Jul 24, 2011, 11:32:49 AM (13 years ago)
Author:
Mikael Brandström Durling
Comment:

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  • Software

    v13 v14  
    55This list is under construction.
    66
     7=== Assemblers and related software ===
     8
     9 * [wiki:Cap3Assembler]
     10 * [wiki:MiraAssembler]
     11 * [wiki:Oases]
     12 * [wiki:Velvet]
     13 * [wiki:Tablet]
     14
     15=== Homology searches and alignment ===
     16
    717 * [wiki:Blast]
    8  * [wiki:Blast2Go]
    9  * [wiki:MrBayes]
    10  * [wiki:Cap3Assembler]
    11  * [wiki:Chimerachecker]
    1218 * [wiki:Mafft]
    13  * [wiki:MiraAssembler]
    1419 * [wiki:Mosaik Assembler]
    15  * [wiki:Mothur]
    16  * [wiki:Oases]
     20
     21=== Programming languages ===
     22
    1723 * Perl [http://www.perl.org] modules for BioPerl [http://www.bioperl.org/wiki/Main_Page] - These are useful if you write your own perl scripts.
    1824 * Python [http://www.python.org] modules for BioPython [http://biopython.org/wiki/Biopython] - The Python ditto to BioPerl.
    19  * [wiki:Tablet]
    20  * [wiki:Velvet]
     25
     26=== Other software ===
     27 * [wiki:Blast2Go]
     28 * [wiki:MrBayes] (not yet installed)