Changes between Version 32 and Version 33 of Software


Ignore:
Timestamp:
05/21/19 20:40:53 (6 years ago)
Author:
Mikael Brandström Durling
Comment:

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  • Software

    v32 v33  
    33
    44In many cases you will need to submit your jobs to GridEngine. This is the case when the runtime exceeds 30 minutes or the memory requirement exceeds 2GB.
     5
     6Please edit the software pages and add notes if you find the information incomplete, or if you want to share any specifics on how the software is used.
    57
    68=== Statistics
    … …  
    1517
    1618
    17 == Old software list ==
    18 Software below might work after loading the module legacy.
    19 === Assemblers and related software ===
    20  * Software/Cap3
    21  * Software/Mira
    22  * Software/Oases
    23  * Software/Velvet
    24  * Software/Tablet
    25  * Software/Trinity
    26  * Software/FastQc
    27  * [[Software/Blast2Go]]
    28  * Software/RocheNewbler
    29  * Software/TopHat
    30  * Software/CuffLinks
    31  *
    32 
    33 === Homology searches and alignment ===
    34  * Software/NCBIBlast
    35  * Software/Mafft
    36  * Software/Mosaik
    37 
    38 === Population Genetics ===
    39  * Software/MrBayes (not yet installed)
    40  * [[Software/MigrateN]]
    41 
    42 === Programming languages and libraries ===
    43  * Perl [http://www.perl.org] modules for BioPerl [http://www.bioperl.org/wiki/Main_Page] - These are useful if you write your own perl scripts.
    44  * Python [http://www.python.org] modules for BioPython [http://biopython.org/wiki/Biopython] - The Python ditto to BioPerl.
    45  * Software/OpenMpi - Message Passing Interface