MykopatGrid available software

This list is under construction.

• Fastqc

Assemblers and related software

• Cap3Assembler
• MiraAssembler
• Oases
• Velvet
• Tablet
• Trinity

Homology searches and alignment

• Blast
• Mafft
• Assembler

Programming languages

• Perl ​http://www.perl.org modules for BioPerl ​http://www.bioperl.org/wiki/Main_Page - These are useful if you write your own perl scripts.
• Python ​http://www.python.org modules for BioPython ​http://biopython.org/wiki/Biopython - The Python ditto to BioPerl.

Other software

• Blast2Go
• MrBayes (not yet installed)