Changes between Initial Version and Version 1 of Software/BBTools


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Timestamp:
May 18, 2021, 5:09:15 PM (4 years ago)
Author:
edpi0001
Comment:

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  • Software/BBTools

    v1 v1  
     1== BBTools ==
     2
     3Load procedure: !`module load bbtools`
     4
     5The software and instructions can be found on: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/
     6BBTools contain several tools that can be used for data manipulation and filtering, including adapter removal and quality trimming.
     7
     8=== Mykopat Grid specifics ===
     9To run this package, just follow the instructions in the documentation. The option "-Xmx" can be used to set the maximum memory used by the commands.
     10In the folder /opt/sources/bbtools_38.90/resources/ you can find some files that come with the bbtools installation and might be mentioned in the BBTools guide. For example, the file /opt/sources/bbtools_38.90/resources/adapters.fa is the file with the most used adapter sequences that is mentioned in the guide for the "bbduk" command.
     11
     12=== Installed versions ===
     1338.90