Changes between Version 1 and Version 2 of Software/BBTools
- Timestamp:
- May 18, 2021, 5:11:01 PM (4 years ago)
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Software/BBTools
v1 v2 4 4 5 5 The software and instructions can be found on: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/ 6 6 7 BBTools contain several tools that can be used for data manipulation and filtering, including adapter removal and quality trimming. 7 8 8 9 === Mykopat Grid specifics === 9 10 To run this package, just follow the instructions in the documentation. The option "-Xmx" can be used to set the maximum memory used by the commands. 10 In the folder /opt/sources/bbtools_38.90/resources/ you can find some files that come with the bbtools installation and might be mentioned in the BBTools guide. For example, the file /opt/sources/bbtools_38.90/resources/adapters.fa is the file with the most used adapter sequences that is mentioned in the guide for the "bbduk" command. 11 12 In the folder /opt/sources/bbtools_38.90/resources/ you can find some files that come with the bbtools installation and might be mentioned in the BBTools guide. 13 For example, the file /opt/sources/bbtools_38.90/resources/adapters.fa is the file with the most used adapter sequences that is mentioned in the guide for the "bbduk" command. 11 14 12 15 === Installed versions ===