FastQC

FastQC is one of many programs available to do QC/QA on Illumina and other hight throughput data. It can be run in either batch mode or as an interactive program. The easiest use is to start it by simply typing fastqc at the prompt once logged in.

The software and instructions can be found on: ​http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/

Mykopat Grid specifics

To run this package, just follow the instructions in the documentation.

Sample usage through qsub: qsub -l h_rt=2:0:0,h_vmem=1G -cwd <<< 'fastqc my_sequences.fq.gz'