GraftM
Load procedure: module load graftm
The software and instructions can be found on: https://pypi.org/project/graftm/
Mykopat Grid specifics
Depends on the following modules (no need to load them):
- orfm
- hmmer
- fxtract
- pplacer
- krona
- mafft
- diamond
Call software using the graftM
command
Installed versions
- 0.12.2
- 0.13.1
NOTE ON 0.13.1 =
This version is Python3 ONLY.
You DO NOT have to call modules to run graftm/0.13.1. These have been specified in the module file.
All python dependencies EXCEPT numpy-py3 are in the python libraries path specified for graftM. (/opt/sw/graftm/0.13.1/lib/python3/site-packages/)
Last modified 4 years ago
Last modified on Nov 16, 2020, 9:12:12 AM