KofamScan

Documentation can be found at ​https://www.genome.jp/tools/kofamkoala/

Mykopat Grid specifics

Example run:

module load kofamscan

module load parallel

module load hmmer

cd /opt/sw/kofamscan/1.3.0

for file in /proj/mykopat-metagenome/gtdb_denitdnra/genomes_denitDNRA_prodigal_faa/*faa; do ./bin/exec_annotation -f detail-tsv --cpu 32 -o "${file%_protein.faa}"_KOs.txt "$file"; done

Installed versions

• 1.3.0 / KEGG database 2024-07-31