Changes between Initial Version and Version 1 of Software/KofamScan


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Timestamp:
Aug 2, 2024, 3:16:21 PM (5 months ago)
Author:
ausa0001
Comment:

--

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  • Software/KofamScan

    v1 v1  
     1== KofamScan ==
     2
     3Load procedure: !`module load kofamscan`
     4
     5Documentation can be found at https://www.genome.jp/tools/kofamkoala/
     6
     7=== Mykopat Grid specifics ===
     8Example run:
     9module load kofamscan
     10module load parallel
     11module load hmmer
     12
     13cd /opt/sw/kofamscan/1.3.0
     14for file in /proj/mykopat-metagenome/gtdb_denitdnra/genomes_denitDNRA_prodigal_faa/*faa; do ./bin/exec_annotation -f detail-tsv --cpu 32 -o "${file%_protein.faa}"_KOs.txt "$file"; done
     15
     16=== Installed versions ===
     17  - 1.3.0 / KEGG database 2024-07-31