Version 3 (modified by 5 months ago) (diff) | ,
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KofamScan
Documentation can be found at https://www.genome.jp/tools/kofamkoala/
Mykopat Grid specifics
Example run:
module load kofamscan
module load parallel
module load hmmer
cd /opt/sw/kofamscan/1.3.0
for file in /proj/mykopat-metagenome/gtdb_denitdnra/genomes_denitDNRA_prodigal_faa/*faa; do ./bin/exec_annotation -f detail-tsv --cpu 32 -o "${file%_protein.faa}"_KOs.txt "$file"; done
Installed versions
- 1.3.0 / KEGG database 2024-07-31