SPAdes short-read de novo assembler

Load procedure: module load spades

The software and instructions can be found on: ​https://github.com/ablab/spades

Mykopat Grid specifics

Run according to instructions on the home page. Please match the -t option to the number of threads you request with SGE option -pe smp, then set the value of the -m option (max memory) to slightly below your product of your requested h_vmem and the number of SMP slots.

Run as spades.py [commands]

Installed versions

• 4.2.0
• 3.15.0