| 1 | == SPAdes short-read de novo assembler == |
| 2 | |
| 3 | Load procedure: `module load spades` |
| 4 | |
| 5 | The software and instructions can be found on: https://cab.spbu.ru/software/spades/ |
| 6 | |
| 7 | === Mykopat Grid specifics === |
| 8 | Run according to instructions on the home page. Please match the -t option to the number of threads you request with SGE option -pe smp, then set the value of the -m option (max memory) to slightly below your product of your requested h_vmem and the number of SMP slots. |
| 9 | |
| 10 | === Installed versions === |
| 11 | - 3.15.0 |
| 12 | |