Subread software package

Load procedure: `module load subread`

The software instructions can be found on: ​​https://bioconductor.org/packages/release/bioc/vignettes/Rsubread/inst/doc/SubreadUsersGuide.pdf I find the command "featureCounts" to be particularly useful for quantifying reads from bam files.

Mykopat Grid specifics

Run according to instructions on the home page. Please match the -T option to the number of threads you request with SGE option -pe smp.

Installed versions

2.0.2