MykopatGrid? available software

Assemblers and related software

• Software/Cap3
• Software/Mira
• Software/Oases
• Software/Velvet
• Software/Tablet
• Software/Trinity
• Software/FastQc

Homology searches and alignment

• Software/NCBIBlast
• Software/Mafft
• Software/Mosaik?

Programming languages and libraries

• Perl ​http://www.perl.org modules for BioPerl? ​http://www.bioperl.org/wiki/Main_Page - These are useful if you write your own perl scripts.
• Python ​http://www.python.org modules for BioPython? ​http://biopython.org/wiki/Biopython - The Python ditto to BioPerl?.
• Software/OpenMpi - Message Passing Interface

Other software

• Software/Blast2Go
• Software/MrBayes (not yet installed)